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cogent3

Comparative Genomics Toolkit 3

coronavirus_comparative

cov_229e_antigenic_drift

covid_indels

data_structures

java related storage of information

dataskillsstudio

dinuq

The Dinucleotide Quantification Python Package

dna_to_protein_weblogo

Takes in an aligned DNA file, translates it to protein and creates a sequence logo plot

dnds-clonesize

Snakemake pipeline to produce figures for "Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios"

dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

einsteinium

Litecoin source tree

endothermy

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

evolutionofneurotrophins

evolutionofneurotrophinsmammalia

exploratory_humangenes

an initial search of human genes from the Human Proteome Project and a measure of all the associated articles related to its function GeneRIFs

fna

some functions manipulating FNA files (Fasta with Newick)

full_spectrum_bioinformatics

An open-access bioinformatics text

gap_analysis

gene-stiochiometry

geneinvestigator

A simple application to interrogate the molecular evolution of a single gene

generode

GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

gerhardlab

gff3

GFF3 file unpacker, fetches transcriptome files from GenBank

halign-3

do multiple nucleotide sequence alignment fast and accurately

handson-ml3

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

helib

HElib is an open-source software library that implements homomorphic encryption. It supports the BGV scheme with bootstrapping and the Approximate Number CKKS scheme. HElib also includes optimizations for efficient homomorphic evaluation, focusing on effective use of ciphertext packing techniques and on the Gentry-Halevi-Smart optimizations.

homebrew-hyphy

a small repository to install hyphy

hyphy_plots

hyphy_triple_hits