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ontology-core

Internal model to represent ontologies and utilities to import ontologies from different formats.

ontoserver

Ontoserver puts SNOMED CT, AMT, LOINC, and FHIR-based CodeSystems at your fingertips.

ontoserver-deploy

Sample deployment project for Ontoserver

open-pedigree

A free and open-source pedigree tool by PhenoTips®

openmrs-module-terminologysearch

A module for OpenMRS to search a FHIR terminology server for concepts.

org.hl7.fhir.core

owlapi

OWL API main repository

packages

Useful FHIR packages to support implementation: fhir.tx.support and fhir.test.data

panogram

pathling

Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.

pathsbeacon

Efficient exchange platform for pathogen genomes and meta-data information adhering to international standards using the sBeacon framework.

peps

Polygenic EpiStatic Phenotype Simulation

phenopacket-schema

Repository for the inlined phenopacket schema

polecat

A tool for browsing the Australian Medicines Terminology (AMT), using the FHIR API exposed by an instance of Medserve.

primary-care-data-technical

primary-care-data-technical-stu3

primary-care-phase2

rappoet

RAP paralelization orchestration engine template: Optimised driver and worker scripts for genomic analyses on UKBB cloud-based, Research Analysis Platform (RAP)

real-time-fhir

A simulated FHIR data source that can write resources into a remote FHIR server in real time.

redcap_advanced_fhir_ontology

REDCap External Module to give autocomplete using a FHIR terminology server with advanced options.

redcap_fhir_ontology_provider

REDCap external module provides support for referencing an external Fhir based ontology server to lookup values.

redcap_pedigree_editor

Redcap External Module to allow the entry of a pedigree diagram, storing the result as a FHIR resource

redcap_simple_ontology_provider

REDCap external module provides simple implementation of the ontology provider mechanism.

redmatch

A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.

release-validation-framework

API for testing a SNOMED CT release as part of the release process.

rf2-to-owl

This project uses the OWLApi to create an OWL ontology, in RDF/XML format, based on the content of standard SNOMED CT RF2 files.

sct-historical-analytics

Data Analytics with historical SNOMED CT data - SNOMED CT Expo 2021

sctau-sample-scripts

Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.

semantic-search

A deep learning based approach for semantic search over large clinical terminology system

sianno-xray