Name: Anne Deslattes Mays
Type: User
Company: Science and Technology Consulting LLC
Bio: https://orcid.org/0000-0001-7951-3439 PhD Tumor Biology, MSc Computer Science, BSc Mathematics solving biological questions at scale in the cloud
Twitter: adeslat
Anne Deslattes Mays's Projects
A single-cell RNAseq pipeline for 10X genomics data
Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018
Six frame translation - as a container attribution Long-Read-Proteogenomics/modules/six_frame_translation
Differential analysis of RNA-Seq
simple slide carousel / photo viewer
Container for tools needed for the nextflow splicing-pipeline-nf
Repository for the Anczukow-Lab splicing pipeline
A docker image to run SQANTI3
The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.
This is the container for transcriptome_summary.py used slightly modified from Long Read Proteogenomics Workflow
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Trimmomatic
Docker Container for trimmomatic
Educational materials for the St. Jude Cloud project.
minimal star-docker container
tools for working with WGBS data while preserving reads intrinsic dependencies
wgcna-docker