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kahn-ngs

knitr

A general-purpose tool for dynamic report generation in R

lachesis

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

linux_thermaltake_riing

Python driver and daemon to control thermaltake Riing fans and pumps

macrophage_response_lpanamensis

singularity container comprising analyses of macrophages infected with Leishmania panamensis.

mas

Manual Annotation Studio (MAS) is a web server which assists users in the process of identifying coding regions and determining the function of genes.

msstats

R package - MSstats

organismdbi

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/OrganismDbi.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=OrganismDbi.

orthofinder

Phylogenetic orthology inference for comparative genomics

perlweeklychallenge-club

Knowledge base for The Weekly Challenge club members using Perl, Raku, Ada, APL, Awk, Bash, BASIC, Bc, Befunge-93, Bourne Shell, BQN, Brainfuck, C3, C, CESIL, C++, C#, Clojure, COBOL, Coconut, Crystal, D, Dart, Dc, Elm, Emacs Lisp, Erlang, Excel VBA, Fennel, Fish, Forth, Fortran, Gembase, GNAT, Go, Haskell, Haxe, HTML, Idris, IO, J, Janet, Java, Ja

presentations

Bring Your Own Bioinformatics

prfdb

Some scripts to search genomic data for significant secondary structures

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

rerrrt

R interface to the data from errrt

ribosome_profiling

ribosome_pymol

scripts to annotate ribosome pdb files

rnaseq_kajal_2020

roary

Rapid large-scale prokaryote pan genome analysis

sagalacticae_2019

scerevisiae_cbf5

Some RNASeq analyses in yeast!

seqel

Emacs extension for biological sequences

spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

stampr

stampr_rtisan

Code for reproducing data from STAMPR experiments

sva-devel

swath2stats

sze

sze

tnseq_gi

Tool for analysis of genetic interactions from TnSeq data. Developed in the Ioerger Lab.

transit

Repository for the TRANSIT and TPP tools developed by the Ioerger Lab