Code Monkey home page Code Monkey logo

bioxtasraw's Introduction

BioXTAS RAW

BioXTAS RAW is a program for analysis of solution Small-Angle Scattering (SAS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis (EFA) or the regularized alternating least squares (REGALS) methods.

Install instructions: http://bioxtas-raw.readthedocs.io/en/latest/install.html

User guides: http://bioxtas-raw.readthedocs.io/

To contact: https://bioxtas-raw.readthedocs.io/en/latest/help.html

Features

  • Calibrate, mask, radially integrate, and normalize 2D images to make 1D scattering profiles
  • Average, subtract, merge, rebin, and interpolate scattering profiles
  • Easily process in-line SEC-SAXS data
  • Calculate radius of gyration (Rg) and I(0) via Guinier fit
  • Calculate the molecular weight via I(0) comparison to standards, absolute calibration, correlation volume, and corrected Porod volume
  • Run GNOM, DAMMIF, DAMAVER, DAMCLUST, and AMBIMETER (requires ATSAS installation)
  • Electron density reconstructions using DENSS
  • Deconvolve SEC-SAXS data using singular value decomposition (SVD) and evolving factor analysis (EFA)
  • Deconvolve SAXS data using regularized alternating least squares (REGALS)
  • Can read >25 image formats including: Pilatus, CBF, HDF5, Eiger, Quantum, Mar345, ESRF EDF, SAXSLab300,16 bit TIF, 32 bit TIF, Bruker, Rigaku SAXS
  • And more . . .!

bioxtasraw's People

Contributors

jbhopkins avatar rgillilan avatar a-detiste avatar

Watchers

 avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.