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11791 - Project
Create a consumer that reads the candidate answer and also the gold standard.
Evaluate retrieved answers with the gold standard using the given MAP and GMAP metrics.
The API shows that document 24939007 has full text, but in fact it doesn't...
To fix that, in the isFullTextAvailable() a secondary check may be added.
Retrieve triples using the helper class and add them to CAS
Modify Metic.java to evaluate snippets
When using the GoPubMedService class, the findUniprotEntitiesPaged() function causes an illegal state exception and the whole thing crashes...
Stack Trace:
uhh... seems to have gone away. but let's leave this here for now.
Rank the retrieved information to produce final answer according question type.
Read the annotations (answers) and store it in UIMA JCas index
Retrieve concepts using the helper class and add them to CAS
Triples retrieved from the PubMed API seems incorrect. New way required to evaluate triples.
Retrieve documents using the helper class and add them to CAS
Write final answer to a JSON file.
Make sure we can process question.json - unannotated input
evaluate using exact_match for M3
Reader annotated question from resources/BioASQ-SampleData1B.json, and generate JCas.
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