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Zhian N. Kamvar

I am a recovering bioinformatician and Research Software Engineer, responsible for developing The Carpentries Workbench.

I have been developing R packages in the realms of population genetics, epidemiology, reproducible research, and publication since 2012. I enjoy cats 🐈‍⬛, baking 🥖, mushroom hunting 🍄, bad horror movies 👻, and good speculative fiction 📚.

I am on sabbatical and will be looking for work starting March 2024

Some of my projects include:

  • {sandpaper}: lesson engine for The Carpentries Workbench
  • {tinkr} (with Maëlle Salmon): conversion from Markdown to XML and back again
  • {poppr}: population genetics toolkit for clonal and/or sexual populations
  • {aweek}: conversion from datetimes to weeks starting on any day of the week

a mushroom growing from a bed of moss in front of a 200 year-old Bonsai in Portland's Japanese Garden

Zhian N. Kamvar's Projects

abyss icon abyss

:microscope: Assemble large genomes using short reads

ade4 icon ade4

Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

adegenet icon adegenet

adegenet: a R package for the multivariate analysis of genetic markers

adv-r icon adv-r

Advanced R programming: a book

apex icon apex

Extension of the R package ape for multiple genes.

aweek icon aweek

Convert dates to arbitrary week definitions :calendar:

beaverdown icon beaverdown

An updated R Markdown thesis template using the bookdown package

bench icon bench

High Precision Timing of R Expressions

bpmodels icon bpmodels

Methods for analysing the sizes and lengths of chains from branching process models

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