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Repository containing lists of all published ancient metagenome samples (and related)
bioBakery tools for meta'omic profiling
Automatically exported from code.google.com/p/cdhit
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
DAS Tool
Accelerated BLAST compatible local sequence aligner.
Rapid comparison and dereplication of genomes
Fast genome-wide functional annotation through orthology assignment
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Pipeline to fetch metadata and raw FastQ files from public databases
De novo assembler for single molecule sequencing reads using repeat graphs
Analyzing and visualizing KEGG information using the grammar of graphics
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
HUMAnN 2.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
The second version of the Kraken taxonomic sequence classification system
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Microbiome Simulation via Generative Adversarial Network
Ultra-fast and memory-efficient (meta-)genome assembler
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Metagenome analysis pipeline
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Supporting code for uncultivated gut virus manuscript
Interpretation and visualization of microbiome charts
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.