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12f1572syncencoder

Encoding 4 channel behavior signal into 500Hz serial signal for syncing with neuropixels.

8odoratmega

behavior_setup

hardware schematic file for mouse behavior setup

behaviorparser

bg-heatmaps

Rendering heatmaps in brainrender

brainrender

a python based software for visualization of neuroanatomical and morphological data.

culturednetwork

Graph theory studies on cultured neuronal networks

dpca

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

dspic30serialuploader

The PC uploader for my dspic30 bootloader

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

elephant

Elephant is the ElectroPhysiology Analysis Toolkit

ephysparser

gephi

Gephi - The Open Graph Viz Platform

mapping

mutual_info_knn

Mutual Information measures using kNN for both continuous and categorical (discrete) variables [Matlab code]

neural-data-transformers

nlb_tools

Python tools for participating in Neural Latents Benchmark '21

nnn

n³ The unorthodox terminal file manager

palm-os-sdk

Archive of Palm OS SDKs

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pic20odor

a 20 odor mice behavioral setup with dspic30f and many peripherals

pixels

Neuropixel scripts

pycdlib

Python library to read and write ISOs

pykilosort

WIP: Python port of Kilosort2

serialj

Record behavioral task events to files. Run on host computer.

spade_applications

Repository containing code necessary to reproduce the results of Stella, A., Quaglio, P., Torre, E., & Grün, S. (2019). 3d-SPADE: Significance Evaluation of Spatio-Temporal Patterns of Various Temporal Extents. Biosystems

spk2fr

Reads spike timing, calculates samples of firing rate given certain condition.

tensortools

Fitting and visualizing tensor decompositions in Python

verilog-ethernet

Verilog Ethernet components for FPGA implementation

zmat

Analyze recorded behavioral task files, interface to Matlab.