Comments (1)
zhangrengang
commented on July 24, 2024
@baozg, these might be false positives by TEsorter. You can see the score and e-value in the *.dom.gff3 or *.dom.tsv file. If the score is very low and the evalue is very high? If that is, I suggest to increase the criteria, such as -eval 1e-6, to identity TE domains on protein-coding genes of hosts.
For TE sequences, the default criteria is OK, because they were initially identified and filtered by other tools, which made them more likely to be true TEs.
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