Comments (1)
Which -db
do you use? TEsorter is able to classify DNA TEs with rexdb
(but not with gydb
). TEsorter is based on protein domains. But Repeatmodeler generate consensus library for repeat masking. The consensus sequence might break coding frame (frame shift), which may lead to failure of TEsorter.
from tesorter.
Related Issues (20)
- error HOT 3
- error to get phylogeny tree using LTR_tree.R script HOT 9
- Does TEsorter results only contain positive strain? HOT 5
- keyError HOT 5
- Hi~ TEsorter can be worked in animal genoem ? HOT 2
- ValueError: invalid literal for int() with base 10: '0.5' HOT 8
- How to analyze the effect of transposons on plant traits in de novo transcriptome assembly. HOT 4
- ModuleNotFoundError: No module named 'RunCmdsMP' HOT 5
- Problem with concatenate_domains.py HOT 1
- How to identify the homology (synteny) of LTRs? HOT 10
- Insertion time calculation HOT 4
- Crash when special characters occurred in sequence IDs HOT 3
- Can TEsorter classify Class II elements(DNA transposons) into clade-level? HOT 2
- Assistance with custom installation directory HOT 5
- How to obtain the set of distances between LTRs and their adjacent genes? HOT 3
- TEsorter genome.fasta -genome -p 20 -prob 0.9 HOT 1
- Allocation into lineages for metazoan LTR-RTs HOT 4
- How to merge the TEsorter repeat libraires HOT 18
- get_full_seqs in LTR_retriever.py generate some empty sequences which should be generated. HOT 4
- Exploring the transposition profile of specific LTRs HOT 1
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from tesorter.