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publications's Introduction

Work in Progress

Selected Publications

  1. Zhang, H., Deng, L., Qin, J., Yu, K. Integrative analysis of multiple case-control studies. Biometrics. Accepted.
  2. Zhang, H., Deng, L., Schiffman, M., Qin, J., Yu, K. (2020). Generalized integration model for improved statistical inference by leveraging external summary data. Biometrika, 107 (3): 689-703.
  3. Zhang, H., Qin, J., Berndt, S. I., Albanes, D., Gail, M. H., Yu, K. (2020). On Mendelian randomization in case-control studies. Biometrics, 76 (2): 380-391.
  4. Deng, L., Zhang, H., Song, L., Yu, K. (2020). Approximation of bias and mean squared error in two-sample Mendelian randomization analyses. Biometrics, 76 (2): 369-379.
  5. Deng, L., Zhang, H., Yu, K. (2020). Power calculation for the general two-sample Mendelian randomization analysis. Genetic Epidemiology, 44 (3), 290-299.
  6. Wong, J.*, Zhang, H.*, Hsiung C. A., Shiraishi K., Yu K., Matsuo K., … Lan, Q. (2020). Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics, 112 (2), 1223-1232. *Equally contributing first authors
  7. Walsh, N.*, Zhang, H.*, Hyland, P. L., Yang, Q., Mocci, E., Zhang, M., … Stolzenberg-Solomon, R. Z. (2019). Agnostic pathway/gene set analysis of genome-wide association data identifies associations for pancreatic cancer. Journal of the National Cancer Institute, 111 (6), 557-567. *Equally contributing first authors
  8. Zhang, H., Wheeler, W., Song, L., & Yu, K. (2018). Proper joint analysis of summary association statistics requires the adjustment of heterogeneity in SNP coverage pattern. Briefings in Bioinformatics, 19 (6), 1337-1343.
  9. Zhang, H., Wu, C. O., Yang, Y., Berndt, S. I., Chanock, S. J., & Yu, K. (2018). A multi-locus genetic association test for a dichotomous trait and its secondary phenotype. Statistical Methods in Medical Research, 27 (5), 1464-1475.
  10. Zhou, Y., Zhang, H., Yang, Y. (2018). CSHAP: efficient haplotype frequency estimation based on sparse representation. Bioinformatics, 35 (16), 2827-2833.
  11. Gu, F.*, Zhang, H.*, Hyland, P. L., Berndt, S. I., Gapstur, S. M., Wheeler, W., … Caporaso, N. E. (2017). Inherited variation in circadian rhythm genes and risks of prostate cancer and three other cancer sites in combined cancer consortia. International Journal of Cancer, 141 (9), 1794-1802. *Equally contributing first authors
  12. Zhang, H., Wheeler, W., Hyland, P. L., Yang, Y., Shi, J., Chatterjee, N., & Yu, K. (2016). A powerful procedure for pathway-based meta-analysis using summary statistics identifies 43 pathways associated with type II diabetes in European populations. PLOS Genetics, 12 (6), e1006122.
  13. Hyland, P. L., Zhang, H., Yang, Q., Yang, H. H., Hu, N., Lin, S. W., . . . Taylor, P. R. (2016). Pathway, in silico and tissue-specific expression quantitative analyses of oesophageal squamous cell carcinoma genome-wide association studies data. International Journal of Epidemiology, 45 (1), 206-220.
  14. Qin, J., Zhang, H., Li, P., Albanes, D., & Yu, K. (2015). Using covariate-specific disease prevalence information to increase the power of case-control studies. Biometrika, 102 (1), 169-180.
  15. Yu, K., Zhang, H., Wheeler, W., Horne, H. N., Chen, J., & Figueroa, J. D. (2015). A robust association test for detecting genetic variants with heterogeneous effects. Biostatistics, 16 (1), 5-15.
  16. Zhang, H., Wheeler, W., Wang, Z., Taylor, P. R., & Yu, K. (2014) A fast and powerful tree-based association test for detecting complex joint effects in case-control studies. Bioinformatics, 30 (15), 2171-2178.
  17. Zhang, H., Shi, J., Liang, F., Wheeler, W., Stolzenberg-Solomon, R., & Yu, K. (2014). A fast multilocus test with adaptive SNP selection for large-scale genetic association studies. European Journal of Human Genetics, 22, 696-702.
  18. Hua, X., Zhang, H.*, Zhang, H., Yang, Y., & Kuk, A. Y. C. (2010). Testing multiple gene interactions by the ordered combinatorial partitioning method in case-control studies. Bioinformatics, 26 (15), 1871-1878. *Corresponding author
  19. Kuk, A. Y. C., Zhang, H., & Yang, Y. (2009). Computationally feasible estimation of haplotype frequencies from pooled genotype data with and without assuming Hardy-Weinberg equilibrium. Bioinformatics, 25 (3), 379-386.
  20. Zhang, H., Yang, H. C., & Yang, Y. (2008). PoooL: An efficient algorithm for estimating haplotypes from large DNA pools. Bioinformatics, 24 (17), 1942-1948.
  21. Zhang, H., Zhang, H., Li, Z., & Zheng, G. (2007). Statistical methods for haplotype-based matched case-control association studies. Genetic Epidemiology, 31 (4), 316-326.

Collaborative Publications

  1. Tian, Y., Guida, J., Koka, H., Li, E., Zhu, B., ... Zhang, H., … Yang, X. R. Increasing fibroglandular dense volume is associated with luminal B and HER2-enriched breast cancer subtype in Chinese women with breast cancer. JNCI Cancer Spectrum. Accepted.
  2. Kiely, M., Tse, S., Koka, H., Wang, D., Lee, P., Wang, F., … Zhang, H., … Yang, X. R. (2020). Age-related DNA methylation in paired normal and tumor breast tissue in Chinese breast cancer patients. Epigenetics. Accepted.
  3. Yuan, F., Hung, R. J., Walsh, N., Zhang, H., Platz, E. A., Wheeler, W., ... Stolzenberg-Solomon, R. (2020). Genetic susceptibility to chronic inflammatory intestinal diseases and pancreatic ductal adenocarcinoma risk: an analysis using genome-wide association study data. Cancer Research. Accepted.
  4. Barry, K. H., Jones, R. R., Cantor, K. P., Freeman, L., Wheeler, D. C., … Zhang, H., … Ward, M. H. (2020). Ingested nitrate and nitrite and bladder cancer in Northern New England. Epidemiology, 31 (1), 136-144.
  5. Zhu, B., Tse, S., Wang, D., Koka, H., Zhang, T., Abubakar, M., … Zhang, H., … Yang, X. R. (2019). Immune gene expression profiling reveals heterogeneity in luminal breast tumors. Breast Cancer Research, 21 (1), 147.
  6. Li, E., Guida, J. L., Tian, Y., Sung, H., Koka, H., Li, M., Chan, A., Zhang, H., … Yang, X. R. (2019). Associations between mammographic density and tumor characteristics in Chinese women with breast cancer. Breast Cancer Research and Treatment, 177 (2), 527-536.
  7. Yu, K., Hyun, N., Fetterman, B., Lorey, T., Raine-Bennett, T. R., Zhang, H., … Schiffman, M. (2018). Automated cervical screening and triage, based on HPV testing and computer-interpreted cytology. Journal of the National Cancer Institute, 110 (11), 1222-1228.
  8. Schiffman, M., Yu, K., Zuna, R., Dunn, S. T., Zhang, H., Walker, J., . . . Wentzensen, N. (2017). Proof-of-principle study of a novel cervical screening and triage strategy: computer-analyzed cytology to decide which HPV-positive women are likely to have ≥CIN2. International Journal of Cancer, 140, 718-725.
  9. Colli, L. M., Machiela, M. J., Zhang, H., Myers, T. A., Jessop, L., Delattre, O., . . . Chanock, S. J. (2017). Landscape of combination immunotherapy and targeted therapy to improve cancer management. Cancer Research, 77 (13), 3666-3671.
  10. Horne, H. N., Chung, C. C., Zhang, H., Yu, K., Prokunina-Olsson, L., Michailidou, K., . . . Figueroa, J. (2016). Fine mapping of the 1p11.2 breast cancer susceptibility locus. PLOS ONE, 11 (8), e0160316
  11. Sung, H., Yang, H. H., Zhang, H., Yang, Q., Hu, N., Tang, Z. Z., . . . Hyland, P. L. (2015). Common genetic variants in epigenetic machinery genes and risk of upper gastrointestinal cancers. International Journal of Epidemiology, 44 (4), 1341-1352.
  12. Berndt, S. I., Wang, Z., Yeager, M., Alavanja, M. C., Albanes, D., . . . Zhang, H., . . . Chanock, S. J. (2015). Two susceptibility loci identified for prostate cancer aggressiveness. Nature Communications, 6:6889, doi: 10.1038/ncomms7889.
  13. Murphy, G., Freedman, N. D., Michel, A., Fan, J. H., Taylor, P., . . . Zhang, H., . . . Dawsey, S. M. (2015). Prospective study of helicobacter pylori antigens and gastric noncardia cancer risk in the Nutrition Intervention Trial cohort. International Journal of Cancer, 137 (8), 1938-1946.
  14. Moy, K. A., Mondul, A. M., Zhang, H., Weinstein, S. J., Wheeler, W., Chung, C. C., . . . Albanes D. (2014). Genome-wide association study of circulating vitamin D-binding protein. American Journal of Clinical Nutrition, 99 (6), 1424-1431.
  15. Hyland, P. L., Lin, S. W., Hu, N., Zhang, H., Wang, L., Su, H., . . . Taylor PR. (2014). Genetic variants in fas signaling pathway genes and risk of gastric cancer. International Journal of Cancer, 134 (4), 822-831.
  16. Yuan, M., Fang, H., & Zhang, H. (2013). Correcting for differential genotyping error in genetic association analysis. Journal of Human Genetics, 58 (10), 657-666.

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