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Name: Edgar Pinedo-Carpio
Type: User
Bio: PhD Student at McGill University
Edgar Pinedo-Carpio's Projects
alphafold
Open source code for AlphaFold.
cellprofiler-plugins
Community-contributed and experimental CellProfiler modules.
colabfold
Making Protein folding accessible to all via Google Colab!
complete-python-3-bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
crispr-dav
CRISPR NGS data analysis and visualization pipeline
crispranalyzer
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
cytoscape_workflows
collection of notebooks with different cytoscape workflows
datasciencecoursera
datasharing
The Leek group guide to data sharing
drugthatgene
DrugThatGene
drugz
DRUGZ software
enrichmentmapapp
Enrichment Map Cytoscape App
examples
Example CellProfiler pipelines.
gsea-desktop
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
mageckflute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
opticalpooledscreens
pinapl-py
A no hassle tool for analyzing your favorite CRISPR screen dataset!
python-udemy
screening_protocols_manuscript
Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
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