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4d-dmm

4D deep motion model

6-dof-robotic-motion-phantom

The Robotic Motion Phantom application provides methods to accurately reproduce the full range and rate of patient-measured tumour motion using a robotically controlled phantom to provide precise 6 DoF geometric quality assurance for advanced radiotherapy approaches.

apa2seg-net

Anatomy-guided Multimodal Registration by Learning Segmentation without Ground Truth: Application to Intraprocedural CBCT/MR Liver Segmentation and Registration (Medical Image Analysis, 2021)

conehead

A collapsed-cone convolution radiotherapy dose calculation algorithm

conrad

CONRAD Repository

coupling_registration_segmentation

This repository is the official repository of the article U-ReSNet: Ultimate coupling of Registration and Segmentation with deep Nets presented in Miccai 2019 (Shenzhen)

d3s

D3S - Discriminative Single Shot Segmentation Tracker (CVPR 2020)

dcmrtstruct2nii

DICOM RT-Struct to mask

deeprl-protontherapy

Combining biological proliferation function and proton radiotherapy simulation for a treatment plan based on reinforcement learning

diffusion-based-segmentation

This is the official Pytorch implementation of the paper "Diffusion Models for Implicit Image Segmentation Ensembles".

elasticdeform

Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).

groupregnet

Implementation of GroupRegNet: A Groupwise One-shot Deep Learning-based 4D Image Registration Method

ideal

Independent DosE cAlculation for Light ion beam therapy using Geant4/GATE. The name of the corresponding python module is pyidc.

idir

Code for the MIDL 2022 paper Implicit Neural Representations for Deformable Image Registration

image_registration_framework

This repository contains image registration through Siamese networks as key point detectors

ismrmrd

ISMRM Raw Data Format

joint-motion-estimation-and-segmentation

[MICCAI'18] Joint Learning of Motion Estimation and Segmentation for Cardiac MR Image Sequences

kimview

Real-time tumour motion, dose, and anatomy visualization tool for radiotherapy

lapnet

lungmask

Automated lung segmentation in CT

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

matrad

An open source multi-modality radiation treatment planning sytem

mc-mrf_reconstruction

This repository can be used to reconstruct MR Fingerprinting data and perform single and multi-component matching with the newly proposed k-SPIJN reconstruction.

meshdeformnet

A deep-learning approach for direct whole-heart mesh reconstruction

midir

Learning Diffeomorphic and Modality-invariant Registration using B-splines (MIDL 2021)

mirtorch

A PyTorch-powered differentiable image reconstruction/optimization toolbox

mri_rl

mripy

A python based MRI reconstruction toolbox with compressed sensing, parallel imaging and machine-learning functions

neuralscenedecomposition

NSD: Neural Scene Decomposition for Human Motion Capture, CVPR 2019

odl

Operator Discretization Library https://odlgroup.github.io/odl/