yunbokai Goto Github PK

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Unix, R and python tools for genomics and data science

-cellrank

CellRank for directed single-cell fate mapping

-pyrovelocity

Probabilistic model of RNA velocity

-stlearn

A novel machine learning pipeline to analyse spatial transcriptomics data

awesome-r-r-

A curated list of awesome R packages, frameworks and software.

awesome-single-cell

更新了各种的单细胞处理工具，非常牛批，经常看看他，大佬写的

ccrcc_sn_publication

his github repository contains the data files and analysis code used in "Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma"

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

decoupler-

R package to infer biological activities from omics data using a collection of methods.

dualst_study-ffpe-

Dual spatially resolved transcriptomics for SARS-CoV-2 host-pathogen colocalization studies in humans

ecotyper

frp

A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.

get_internet_shengxin_paper

抓取网络文章到github issues保存 很多公众号文章都在这里

giotto

Spatial omics analysis toolbox

hnscc-

Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022

iobr

神包IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

jmzeng1314-5years-summarize

kor_hcc-

推送https://mp.weixin.qq.com/s/fm-lMnOx-I0fKHh4tJXjFQ

lme_scrnaseq

一个单细胞处理脚本 还不错

macaca-sn-ana2022-

macrophage-heterogeneity-after-mi

心梗后的巨噬细胞异质性单细胞空间转录组；有较为完整的空转分析，包括spotlight和monocle,以及完整的单细胞提取亚群分析

metarisk-hnscc-

Codes for METArisk

meylan_et_al_2022

肾癌FFPE FZ CC文章

mfi-nature-

mistyr

Multiview Intercellular SpaTial modeling framework空间模式探索

progeny-bulk

R package for Pathway RespOnsive GENe activity inference

pulse

PULSE: Self-Supervised Photo Upsampling via Latent Space Exploration of Generative Models

python_auto_office

关注公众号：Python自动化办公社区，发送：1109，领取《47页PPT-Python如何进行自动化办公？》。

rcc-spatial-mapping

Mapping single-cell transcriptomes in the intratumoral and associated territories of kidney cancer文章代码 空间转录组与侵袭前沿；NMF;Nichnet;和cell2loaction

renaltumor

Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinomaCD文章代码极好