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.tmux

🇫🇷 Oh My Tmux! Pretty & versatile tmux configuration / customization made with ❤️

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

clang-format-travis

dlrm

An implementation of a deep learning recommendation model (DLRM)

f5c

Re-engineered and optimised Nanopolish call-methylation module (supports CUDA acceleration)

flexfloat

C library for the emulation of reduced-precision floating point types

gasal2

gatk

Official code repository for GATK versions 4 and up

gcsa2

BWT-based index for graphs

gendp

GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis

genomeworks

SDK for GPU accelerated genome assembly and analysis

gpu_graph_algorithms

Term Project, Parallel Algorithms, Summer 2020, The University of Texas, Austin

inference

Reference implementations of MLPerf™ inference benchmarks

inference_results_v3.0

This repository contains the results and code for the MLPerf™ Inference v3.0 benchmark.

kvazaar

An open-source HEVC encoder

medaka

Sequence correction provided by ONT Research

mica

a Pin tool for collecting microarchitecture-independent workload characteristics

minimap2-acceleration

Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository

nanopolish

Signal-level algorithms for MinION data

oscpu-framework

A Verilator-based demo.

pairhmm

Optimization of a Haplotype PairHMM class for GPU processing

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

sentence-vae

PyTorch Re-Implementation of "Generating Sentences from a Continuous Space" by Bowman et al 2015 https://arxiv.org/abs/1511.06349

server-tools

spoa

SIMD partial order alignment tool/library

svt-hevc

SVT HEVC encoder. Scalable Video Technology (SVT) is a software-based video coding technology that is highly optimized for Intel® Xeon® processors. Using the open source SVT-HEVC encoder, it is possible to spread video encoding processing across multiple Intel® Xeon® processors to achieve a real advantage of processing efficiency.

tools

trans-omics-acceleration-library

vg

tools for working with genome variation graphs