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Name: yibo dong
Type: User
Company: Florida Bureau of Public Health Laboratories
Bio: Database Consultant
Location: Jacksonville, FL
Name: yibo dong
Type: User
Company: Florida Bureau of Public Health Laboratories
Bio: Database Consultant
Location: Jacksonville, FL
A pipeline to seperate NGS sequencing data into chloroplast, mitochondria and nuclear genomes, and then call SNPs in the 3 genomes respectively.
Open source code for AlphaFold.
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
ARTIC nanopore protocol for nCoV2019 novel coronavirus
A flexible pipeline for complete analysis of bacterial genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Conda recipes for the bioconda channel.
The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples
Nextflow workflow for our analysis of SARS-COV-2
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
These scripts are used for silic simulation analysis of enzyme-cutting-genome
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Fast Whole-Genome Similarity (ANI) Estimation
Automatically exported from code.google.com/p/figtree
Depth-weighted De-Mixing
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
LongQC is a tool for the data quality control of the PacBio and ONT long reads.
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
a GBS-based pipeline for calling SNPs from a group of samples with different ploidy.
only CDCgov/mycosnp-nf-1.4 works in HPG
This repository contains an analysis pipeline developed to characterize WGS output
bioinformatics pipeline that could generate genome-wide SNP genotype data for a conventional genetic diversity analysis of a non-model plant species
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.