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boidsfun

Boids model simulation for fun

brcs

biased random colours

bulb_control

controlling TP-Link smart bulb (Kasa) for scientific reasons

colloids

Python and C++ library to process both experimental and simulation data of colloidal particles.

coursera_capstone

To submit the assignments for the data science course on Coursera

draw_spheres_3d

Draw binary sphere in a 3D image

excel-data-plotter

Developed with the help of chatGPT. Prompt history included in the commits.

expdyn

dynamical analysis for experimental trajectories

explore_lif

load an image from lif file as a numpy array

ezdata

handy gui app to process experimental data

first-contributions

🚀✨ Help beginners to contribute to open source projects

fishpy

Python Scripts for processing fish videos

fishpy-benchmark

Benchmarking the 3D Tracking Accuracy of FishPy package. Also serves as a demonstration.

fishsim

Simulating collective behaviour of fish

hsmc

Hard Sphere Monte Carlo Simulation

ising-mc

simulation just for fun!

learn-tiff

Learning to work with lib tiff

nplocate

locate nano particles in 3D volumetric confocal images

peri

Parameter Extraction from Reconstructing Images

phd-thesis-yy-bristol-2022

Yushi Yang PhD Thesis 2022 University of Bristol

projective_correct

example code to correct the projective in the image

segview

visualising segmentation result

tcc

The Topological Cluster Classification algorithm

tcclib

Python wrapper for Topological Cluster Classification

vim-config-yy

yaggie

package used in THETA project in BCFN

yangyushi.github.io

my notebook

zefiia

zebrafish image analysis