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alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

arpeggio

Calculation of interatomic interactions in molecular structures

bacillus_operon

binf8500

Code for the BINF 8500 - Bioinformatics Algorithms class.

brenda-nlp

Extract enzyme kinetic properties from scientific literature.

brendacyc

brendadb

Load and query the BRENDA database in R.

cancer-stage-classifier

A classifier for separating different stages of cancer based on RNA-Seq, protein pKa and methylation data.

casper

A modification of the default Ghost theme Casper.

chest-xray-pneumonia-clasifier

Image classification project: https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia

docker-compose

Compose files for local development and remote VPS.

driven

Data-Driven Constraint-based analysis

duyaoss-spider

A spider and OCR module for DuyaoSS.

ggpubr

'ggplot2' Based Publication Ready Plots

goduyaoss

Getting data from www.duyaoss.com

google-ml-crash-course

Going through the Google machine learning crash course with PyTorch code.

gse157220

Learning about scRNA-Seq analysis using Snakemake.

homebrew-cask

🍻 A CLI workflow for the administration of macOS applications distributed as binaries

hugo

The world’s fastest framework for building websites.

hugo-northeast

A Hugo theme using Tailwind CSS.

jandan_crawler

Web spiders for http://jandan.net/pic

knowledge-base

Things I've learned.

leetcode

My Python code for LeetCode.

liebling

Beautiful and clean Ghost theme that is easy and comfortable to use. To get the latest version please head over the releases page and download the file liebling.zip of the latest release.

lightning-hydra-cookiecutter

PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡

logomaker

Software for the visualization of sequence-function relationships

love100

100 things to do together.

markdown-checklists

Python Markdown extension for lists of tasks with checkboxes

metabolike

Identifying reprogrammed metabolic routes given omics data.

plugin-git

Git plugin for Oh My Fish (similar to oh-my-zsh git)