xsliulab Goto Github PK

beacon

Beacon (灯塔) of liulab

bioconda-tutorial

bioconda教程中文版

bioforum2019-tigs-poster

A poster showing TIGS project at BioForum2019, ShanghaiTech University

cdc20

cnafingerprint

cnafingerprint_demo

cnv_calling_pipeline

ABSOLUTE Copy Number Calling Pipeline for Raw Sequencing Data

ecdna_immune

Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism

folst2021-immunediting-poster

folst2021-pancancercnasig-poster

A poster showing Pancancer CNA signature project at FoLST2021, ShanghaiTech University.https://xsliulab.github.io/FoLST2021-PancancerCNAsig-Poster/

ggct

gsvautils

hrdcna

A robust homologous recombination deficiency predictor based on copy number alteration features

hypoxia_target

Deep learning reveals the metabolic vulnerability of hypoxic tumor cells and the critical function of FLAD1 mediated tumor hypoxia adaption

ici-impaired-by-sex

Code for paper

immunoediting

Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

immunoediting_response_letter_cr

interpretationanalysishrdcna

An interpretation analysis of copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology

liulab-rotation-2018

DOC for rotation student in Xuesong-Liu lab

methydeep

neoantigen_depletion

neoantigen depletion checking and detection

neoantigen_validation

neodb

Shiny Web Server and Database for Neoantigen discovery

neopeptide_data

noncoding-cdc20

noncoding-code-2020

CDC20 noncoding project

pan-cancer_cna_signature

https://xsliulab.github.io/Pan-cancer_CNA_signature/

pc_cna_signature

Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/

pep2tcr

Pep2TCR: a novel deep learning method for CD4 TCR specificity prediction

promotermutspot