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Name: Shicong Xie
Type: User
Company: @Stanford University
Bio: Cell & computational biologist. Thinks about how cell size is controlled.
Location: Stanford, CA
Shicong Xie's Projects
3d_segmentation
Python library for 3D segmenting
accutrack
aics-ml-segmentation
correct_3d_drift
crispri_hamming_distance
cta_analysis
cycd_target_search
deepcell
deepcell-tf
Deep Learning for Single Cell Analysis
disperse
DisPerSE: Automatic feature identification in 2D and 3D
dmorgens-castle
edge
Embryo Development Geometry Explorer (EDGE) is a program written by Michael Gelbart at Princeton University used to analyze data sets of developing embryos from confocal microscopes.
edge_interface
Additional code for interacting with data output by EDGE
facs
FloJo analysis
firthlogist
A Python implementation of Firth Logistic Regression
glasbey
Generate maximally distinct sets of colors
gui
GUIs utilities
hesc_iamges
hesc_images
ilastik
ilastik-shell, applets, and workflows to string them together.
image_analysis
Image processing and analysis tools
imagej
:sparkler: Open scientific N-dimensional image processing :microscope:
images
matlab_utils
Basic MATLAB utilities
mouse_skin_size_control
mtheme
A modern LaTeX Beamer theme
napari
napari: a fast, interactive, multi-dimensional image viewer for python
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
play_this
Flask micro-app for making a playlist
pulse_finding
Package for finding myosin pulses quantified from live images. Also tools to analyse pulses.
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