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adni

Work related to Alzheimer's Disease cohort ADNI.

aesops

az

Alzheimer challange

deepg

dotgen

DOT - Decorrelation by Orthogonal Transformation, a gene-set analysis by combining decorrelated association statistics

g19s

GAW19 sequencing data analysis

ggplot2

An implementation of the Grammar of Graphics in R

gno

Genotype Tools in R

gtools

Batch partition the samples in a PLINK BED file set.

gws

gwas tool I programmed in MSU

hpcwp

HPCC wrapper to create and manage paralell jobs

impgen

Impute missed genotype calls

kgp

1000 Genome Project related works

knn

Kernel Neural Network

mi_twin

Michigan Twin study

mnq

A R package for MINQUE, backed by RcppArmadillo

pds

Posterior Distribution Simulator

pegs_common

Common libraries and tools for the NIEHS PEGS data.

plinkfile

Reader for PLINK BED format

predicting-county-rcl

We merged data from the 2010 Census, 2012 County Presidential Data from the MIT Elections Lab, and Small Area Estimates from the National Surveys on Drug Use and Health (NSDUH) from 2010 to 2012 at the county level. We then stacked an ensemble of logistic regressions fit to random realizations of the observed data using a minority oversampling technique. One county where recreational cannabis could be legally sold in 2014 was sampled for every two counties where it could not. County-level probability estimates are weighted averages of predictions from each logistic model. The optimal cut-off can be varied to either minimize the false positive (Type I error) or false negative (Type II error) rate.

r_fun_comp

Function Composition for R language

sage

Study of Addiction: Genetics and Environment (SAGE)

simgen

Simulation tools for statistical genetics.

spoon-knife

This repo is for demonstration purposes only.

tcom

Utilities for TCOM (Transformational Collaborative Outcomes Management)

ukb

UK Bio-bank related works

understandingtcomdata

Repository for sharing code for use with TCOM data

using-emacs

ustgen

U-statistical Test for genetics

vla_sim

Variance Loci Analysis - Simulation Studies