Comments (2)
While running conversion of MTBLS2 with NA filtering on variable metadata column database_identifier
:
Traceback (most recent call last):
File "/Users/pierrick/dev/galaxy-isa/tools/isa2w4m/isa2w4m.py", line 9, in <module>
isatab2w4m.main()
File "/Users/pierrick/dev/isa-api/isatools/convert/isatab2w4m.py", line 574, in main
filter_na_values(assays, table='var', cols=args_dict['var_na_filering'])
KeyError: 'var_na_filering'
from isa2w4m.
Corrected inside isatools library.
from isa2w4m.
Related Issues (13)
- Extract raw data HOT 1
- Reorder output datasets
- W4M integration HOT 4
- Move this tool into tools-metabolomics
- Convert also ISA-JSON
- Make planemo test work in Travis CI HOT 1
- Select study by study ID
- Rename output dataset
- Error when converting MTBLS1 into Galaxy HOT 1
- Use isa-tab instead of isa as input type
- Test NA filtering on multiple columns HOT 1
- Failure when filtering on a column with only NA values HOT 1
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