Marnin Wolfe's Projects
Project Docs / Knowledge Base / Personal Notebook template for Academic Website Builder
📖 Documentation site for Academic Website Builder
Functions added to AlphaSimR to simplify simulating breeding schemes
Functions to facilitate simulation of a breeding program using AlphaSimR, inspired / based on AlfSimHlpR by Jean-luc Jannink and Moshood Bakare.
This workflowr project is for the NextGen Cassava Breeding Scheme Optimization.
The purpose of this document is as a manual, a teaching tool and a codebase to support genomic selection-related standard operating procedures (SOPs). This should serve to support the NextGen Cassava Breeding Project (http://www.nextgencassava.org) and its community of practice partnerships.
Conversion of DArTseqLD data and imputation of DArT report DCas20-5360 (EMBRAPA GS C2).
Genomic Mate Selection
GS Example Repository for 2022 workshop
📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!
Genomic selection of IITA GS C4, July 2019
Refresh the IITA genomic predictions for all available germplasm with new field trial data.
Imputed and processed IITA-EA cassava DArTseqLD report "DCas20_5261".
Genomic selection of NaCRRI GS C2, September 2019
Conversion of DArTseqLD data and imputation of DArT report DCas20-5419 for NaCRRI. Additional genomic prediction and selection to follow.
Analysis to compute quality metrics on NGC trials from DB for presentation and NGC 2020 project meeting.
Genomic selection of NRCRI GS C2, July 2019
April 2020: Re-prediction for genomic selection of NRCRI GS C2. Includes prediction of total genetic merit. Includes nearly package-able functions. October 2020: Imputation DCas20_5440 + DCas20_5510 plus fresh genomic prediction including GS C3a.
This project documents informatics and genomic prediction to support the National Root Crop Research Institute 2021 cassava genomic selection breeding program.
Complete set of functions for the prediction of additive and dominance genetic variances and co-variances among full-siblings, based on parents.
Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices
TARI 2020 GS: (1) Conversion of DArTseqLD data and imputation of DArT report DCas20-5629 (with GS C1). (2) Cross-validation and genomic prediction
Academic blog and website. Come to learn about me, stay for the quantitative genetics.