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aichat

All-in-one CLI tool for 10+ AI platforms, including OpenAI(ChatGPT), Gemini, Claude, Mistral, LocalAI, Ollama, VertexAI, Ernie, Qianwen...

argc-completions

Completions for any shell. Supports 1000+ commands. Automaticlly generate completion definition from help text and man page.

chatmol

ChatGPT in PyMOL now!

clash-for-linux-backup

Linux最完整的Clash for Linux的备份仓库，完全可以使用！由Yizuko进行修复及维护

colabdesign

Making Protein Design accessible to all via Google Colab!

colabfold

Making Protein folding accessible to all!

ddgscan

DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein

devika

Devika is an Agentic AI Software Engineer that can understand high-level human instructions, break them down into steps, research relevant information, and write code to achieve the given objective. Devika aims to be a competitive open-source alternative to Devin by Cognition AI.

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

evo

DNA foundation modeling from molecular to genome scale

evolocity

Evolutionary velocity with protein language models

flexpose

FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.

foldcomp

Compressing protein structures effectively with torsion angles

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gmxanalysis

For the purpose of post progressing of MD carried by gromacs

gr-predictor

localpdb

Python package to manage protein structures and their annotations

metabuli

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

opendevin

🐚 OpenDevin: Code Less, Make More

protein-dpo

Aligning protein generative models with experimental fitness

proteinmpnn

Code for the ProteinMPNN paper

pymol-script-repo

Collected scripts for Pymol

rf_diffusion_all_atom

Public RFDiffusionAA repo

rosettaddgprediction

stable-diffusion-webui

Stable Diffusion web UI

ttime

🚀 A concise, efficient, good-looking input, screenshot, and word translation software

viamd

Visual Interactive Analysis of Molecular Dynamics

window-switcher

Easily switch between windows of the same app with Alt+` (Backtick), also switch between apps with Alt+Tab.