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atacseq_note

bulk-rnaseq-deconvolution-with-scrnaseq

The deconvolution for bulk RNAseq is to have a cell type fraction ratio, say differentational vs un-differential cell fraction in the sample.

cellranger_work_note_brief

Brief summary for the usage of cellranger use the public scRNAseq data

genecards_scraper_python

Get Gene Function discription from gene card website

genome-repeats

mainly for transposable elements

kpnn

Knowledge-primed neural networks

methylation_note

microarray_gsea_note

perl-scripts-in-work-

phosphoproteomics-data-anlaysis-note

note the important steps in the phospho data analysis

python-scripts-in-work

some python scripts that handle genome files

r-scripts-use-in-work

some R scripts that write in work

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scrna-seq

single cell RNA seq by Seurat

snakemake_rnaseq_1

This is the record of process that to setup/write and use snakemake workflow to analysis RNAseq data, both upstream and downstream differential expression analysis and plots.

somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

some-shell-scripts-

some shell scripts that use in work, maybe common in gene name or list output

sunnygood.github.io

personal site

whiteorchid.github.io

personal site

whole-exome-sequencing-scripts-bwa-gatk-annovar-