Comments (1)
If you want to download the experimentally determined structures, you can go to the PDB website, e.g. https://www.rcsb.org/structure/8PA2.
If you want to download the AF2 predicted structures, please refer to https://alphafold.ebi.ac.uk/.
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Related Issues (20)
- per residue representations HOT 2
- Problem of 'Some weights of EsmForMaskedLM were not initialized from the model checkpoint at ./SaProt_model and are newly initialized' HOT 1
- 'utf-8' codec can't decode byte 0x80 in position 64: invalid start byte HOT 1
- How to use my own dataset HOT 5
- Reproducibility issues - Different scores than the ones from ProteinGym HOT 7
- How to reproduce the SaProt_35M_AF2? HOT 9
- How / where do I tell SaProt to use the fine tuned model? HOT 4
- How can I use Saprot to predict the mutational effects on my own protein? HOT 9
- Inconsistent config in `SaProt_35M_AF2.pt` when loading by the esm implementation HOT 1
- Fine-tune SaProt on the Thermostability task HOT 2
- Guideline for fine-tuning a pre-trained model with specific protein thermal stability data HOT 2
- Dataset overlap HOT 2
- Output dimension HOT 1
- Downloading pretraining dataset from huggingface HOT 1
- How to interpret mutational effect output? HOT 2
- Training SaProt with a smaller ESM model HOT 1
- Evaluate multiple mutation effect HOT 5
- can not use foldseek HOT 1
- Contact map prediction HOT 1
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