westgermangenomecenter Goto Github PK
Name: West German Genome Center
Type: Organization
Bio: The new home for workflows and software made by / for the WGGC
Twitter: WGGC_de
Location: Germany
Blog: https://wggc.de/
West German Genome Center's Projects
bcl2fastq2_pipeline
A snakemake-based workflow for converting Illumina's bcl files to fastq files with the option of further downstream analysis (using FastQC, STAR+RSeQC, cutadapt) and encryption via gocryptfs
bng_nanotator
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
bulkrnaseqgui
A shiny / TCC-GUI based application for users RNASeq data analysis / exploratory plotting
circrna_detection
circs_snake : a snakemake-based circRNA detection workflow
deep_snake
deep_snake - snakemake-based deepconsensus (Pacbio SequelII subreads - to deepconsensus.fastq)
scrnaseq_pipeline
A snakemake- and seurat-based scRNA-seq analysis pipeline.
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