weilerp Goto Github PK
Name: Philipp Weiler
Type: User
Company: @theislab
Bio: Ph.D. candidate in Computational Biology and Mathematics at Technical University Munich and Helmholtz Munich.
Twitter: PhilippWeiler7
Philipp Weiler's Projects
anndata
Annotated data.
beetles-tda
Python code for corresponding blog post on Towards Data Science
bioconda-recipes
Conda recipes for the bioconda channel.
cellrank
CellRank for directed single-cell fate mapping
cellrank_notebooks
Tutorials and figures for CellRank
fastai
The fastai deep learning library, plus lessons and tutorials
giotto-learn
A high performance topological machine learning toolbox in Python
moscot
Multi-omic single-cell optimal transport tools
muon
muon is a multimodal omics Python framework
sc-templates
Templates for single-cell pipelines
sc_analysis_template
Template repository for analysis of single-cell data and tools.
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scvelo
RNA Velocity generalized through dynamical modeling
scvelo_notebooks
seacells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
seurat
R toolkit for single cell genomics
spatialdata-notebooks
spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
tradeseq-py
TRAjectory Differential Expression analysis for SEQuencing data
us-election-tda
wot
A software package for analyzing snapshots of developmental processes
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