Comments (1)
Hi @MarkDWilliams , I tried your query and noticed you were giving the type
"ChemicalSubstance"
to "UMLS:C0520909"
, but that curie is actually the disease/phenotype "Postoperative Nausea and Vomiting"
.
Also, we don't currently support concept subtyping, so "named_thing"
is going to miss possible results. Here is a modified version of your query (changing only the type
of each node) that gives back some answers:
{"message":{
"query_graph": {
"nodes": [
{
"id": "n0",
"set": false,
"curie":"UMLS:C0520909"
},
{
"id": "n1",
"type": "disease",
"set": false
}
],
"edges": [
{
"id": "e0",
"source_id": "n1",
"target_id": "n0"
}
]
}
}}
from medikanren.
Related Issues (20)
- ITRB deployments HOT 1
- Deploy TRAPI 1.3 HOT 1
- How to construct queries HOT 1
- Improved concept search
- Output not being flushed
- Chembl prefix being used HOT 2
- A bunch of semi-related tasks to help transition to mediKanren 2 HOT 1
- Port the webserver to mediKanren 2
- Implement TRAPI 1.1 compliance for the May Relay
- Augment our server with “pragma” style directives that extend TRAPI HOT 1
- Implement the ability for TRAPI requests to span multiple KGs HOT 1
- Implement light weight reasoning / query expansion
- Implement / improve node and edge normalization
- Make sure the NCATS TRAPI queries we are getting don’t break or DoS the server
- Make sure the NCATS TRAPI test queries return reasonable answers
- Make sure the NCATS TRAPI test queries return nonempty answers
- Make sure the NCATS TRAPI test queries return valid answers
- Connection being dropped on long server requests
- Better logging on TRAPI server HOT 1
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from medikanren.