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alisandra avatar alisandra commented on August 12, 2024

We did one small investigation in this direction. It, as you guessed, hurt performance on plants & animals, and we didn't continue further.

I do think the idea, ideally with more, and more diverse training data and a larger model, is nevertheless promising.

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nhartwic avatar nhartwic commented on August 12, 2024

Any chance you still have a trained model from that investigation kicking around somewhere and are curious how it will perform on weird stuff like brown algae, soft corals, and gymnosperms?

I'd be happy to do some limited testing. Good reference grade gene predictions aren't really available here so we are mostly at the mercy of buscos and purely descriptive statistics for performance metrics. I get that you are probably busy and this all-eukaryote model probably still won't work great, at best won't be entirely clear how well it is working, but I thought I'd extend the offer anyway.

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alisandra avatar alisandra commented on August 12, 2024

Ah, unfortunately I would not have that model anymore, but thanks for the offer here, it's a great idea 🔥

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