washington-university Goto Github PK

access_hcp_data

Utilities for access to Amazon S3 HCP OpenAccess data for pipeline running

at_cmd_utils

Utility scripts for the at command

balsa

chpc_qunex_runutils

Scripts and parameters files for running Qu|Nex container on the CHPC

cifti-matlab

MATLAB code for reading and writing CIFTI connectivity files

ciftilib

C++ Library for reading and writing CIFTI-2 and CIFTI-1 files

dcm_to_4dfp

Convert DICOM files into 4dfp

get-data-for-vetting

Utility scripts to retrieve data from Connectome DB resources and place them in shared directories for examination and vetting

gradunwarp

Gradient Unwarping in Python

hawg-examples

HAWG example JSON files

hcp

Main HCP repo, probably mostly python stuff.

hcp_db_util

Scripts for accessing the Human Connectome Project server

hcp_functional_qc_pipeline_customizations

HCP Functional QC (aka Level2QC) pipeline

hcp_functional_qc_tools

Python based scripts required for Functional QC Pipeline (aka Level2QC Pipeline) for HCP-IntraDB

hcp_functional_qc_xnat_module

Module for displaying Functional QC Assessor results in XNAT

hcp_functional_qc_xnat_plugin

XNAT pages required for HCP QC as a plugin

hcppipelines

Processing pipelines for the HCP

hcppipelinesdocker

Files related to running the HCP Pipelines using Docker

hcppipelinesrunutils

Utilities for running and checking completion status of HCP Pipelines

hcppipelinessingularity

Files related to running the HCP Pipelines using Singularity

hcppipelinesxnatpbsjobs

hcppipelinesxnatsingularity

megconnectome

MEG data processing pipelines for the HCP Young Adult project

monitor-hcp-pipelines

nhppipelines

Enhancements of HCP Pipelines for non-human primates

pbs_utils

PBS Job Scheduler Utility Scripts

pipeline_environment_setup_scripts

pipelines_testing

Data management and testing of the HCP Pipelines

retinotopyskeleton

structuralqc