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baby_cnn

Unet--baby MRI brain segmenation

courseinbiomedicalimageanalysisvisualizationandartificialintelligence

fastai-v3

Starter app for fastai v3 model deployment on Render

fastbook

The fastai book, published as Jupyter Notebooks

hypothalamus_seg

a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans

id-seg

This repositories include python code for infant deep learning segmentation framework we developed.

infant-dwi-april

Complete pipeline to perform tractography from infant diffusion MRI data. 2024 April version

infant_finer_segmentation

latentdfc_adhd

mfsda_python

Multivariate Functional Shape Data Analysis in Python (MFSDA_Python) is a Python based package for statistical shape analysis. A multivariate varying coefficient model is introduced to build the association between the multivariate shape measurements and demographic information and other clinical, biological variables. Statistical inference, i.e., hypothesis testing, is also included in this package, which can be used in investigating whether some covariates of interest are significantly associated with the shape information. The hypothesis testing results are further used in clustering based analysis, i.e., significant suregion detection. This MFSDA package is developed by Chao Huang and Hongtu Zhu from the BIG-S2 lab.

mridoc

Share MRI knowledge through this github

quicknat_pytorch

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

rsfmri_preprocessing

sebre

Developing Brain Atlas through Deep Learning

shap

A game theoretic approach to explain the output of any machine learning model.