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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

aipy

Python机器学习、深度学习算法开发等学习资源分享

attentiondeepmil

Implementation of Attention-based Deep Multiple Instance Learning in PyTorch

awesome-imbalanced-learning

Everything about class-imbalanced/long-tail learning: papers, codes, frameworks, and libraries | 有关类别不平衡/长尾学习的一切：论文、代码、框架与库

clam

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

deep-histopath

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

deeppathology-crc

Detection of pathological colorectal cancer based on deep learning

dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

genemutationfromhe

Gene mutation and pathway activity prediction from H&E slides

image-feature-extraction-transfer-learning

CNN Architectures : VGG, Resnet, InceptionNet, XceptionNet

imbalanced-dataset-sampler

A (PyTorch) imbalanced dataset sampler for oversampling low frequent classes and undersampling high frequent ones.

imgaug

Image augmentation for machine learning experiments.

model-soups

nhanes_tools

nhanesr

opencv-doc-zh

:book: [译] OpenCV 中文文档

patho_ai

practicum

python-wsi-preprocessing

Python Whole Slide Image Preprocessing

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

remix

[MICCAI2022] This repository holds the Pytorch implementation for the ReMix augmentation described in the paper "ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification"

resnext-pytorch

sish

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

smooth-topk

Smooth Loss Functions for Deep Top-k Classification

stain-normalizer

A color normalization method for whole slide image(WSI) tiles, coded with cupy and tifffile, accerated by GPU, inspired by torchstain.

test-repo

test

tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

tmi2022

A graph-transformer for whole slide image classification

torchstain

Stain normalization tools for histological analysis and computational pathology

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.