Comments (1)
Thank you for the detailed report. I was able to recreate the issue, and see two things to address.
The first is easy enough. fermi-lite actually deallocates the input sequences after assembly. This is why calling GetSequences
afterward is giving garbled answers. I need to 1) make this clear in the documentation and 2) have GetSequences return a zero-length vector if the sequences have been deallocated from the FermiAssembler object.
The second, the failure to assemble contigs in this example, is more baffling to me. I think this is more in the scope of figuring out the right parameter settings in fermi-lite for this assembly. I'll look into this more, but this will likely take longer to address.
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