waelskamel Goto Github PK
Name: Wael.Kamel
Type: User
Company: Oxford University
Twitter: WaelSKamel
Location: Oxford/Uppsala
Name: Wael.Kamel
Type: User
Company: Oxford University
Twitter: WaelSKamel
Location: Oxford/Uppsala
Loop through files and do something
Tool to show protein coverage across different samples/condition, using the Maxquant output file "peptdies.txt"
Mapping the Number of differences (Mismatch/deletion/Insertion) per Chromosome/strand in RNA-seq alignment sam file
detect and count non template additions to the sequencing reads, useful for polyA detection and other modification to RNA
perl script to summarize flag values and thier counts in SAMfile
counting Insertion (I), deletion (D), splcing(N) events from CIGAR string in sam file generated by STAR aligner
# Summarising total mismatches, insertions, deletions in Sam file # SAM file based on STAR aligner 2.7.2b # infected samples with SINV mcherry virus, the scripts will assign values for cellular, viral genomic and subgenomic, keep strand information separate for downstream processing.
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