Problems running Part2 about ggir HOT 7 CLOSED

Does folder 'C:/GGIR/output_2g_control' exists?
Is there a file inside the folder 'C:/GGIR/output_2g_control/meta/basic'?

Either no data is saved after part 1 or the data is save somewhere else.
Some suggestions:

• Remove the _ from the data folder name. It might be that this confuses the code.
• Check that you have read&write permissions to the folders or drive you are saving to
• Try using a different folder location

Please let me know whether any of these suggestions addresses the issue

from ggir.

Hi Vincent

Thank you for your reply. In response to your queries:

Yes, part 1 of GGIR seems to work fine, therefore producing a R meta file for each raw file. A results folder is also produced but inside only has a QC folder inside. In the results folder is a file containing the filelocationkey and R sessioninfo_part1 file but no part2_daysummary or part_2summary.

I have removed all _from raw and output folders, still part 2 failed with the same error message.
I have checked the read & write permissions, still part 2 failed with the same error message.
I have changed the location and drive of the folder location and still part 2 failed with the same error message.

Any further help that you could offer is greatly appreciated.

Kind Regards
Debbie

from ggir.

Can you upload the .RData file that comes out of part1 here? or if it includes patient sensitive information then email it to me.

from ggir.

Hi Vincent,
For ease, we can use this thread for communicating. I've emailed my sessioninfo_part1 data if you'd like a 2nd example to Debbie's post. Github won't allow a .RData upload. Let me know if you'd like it uploaded in another way.
Thank you!
Jonathan

from ggir.

from ggir.

Please see my response to the same issue here: #32. In short, the outputdir argument is probably not correctly specified.

from ggir.

I assume this issue can be closed with listed in solution #32 and/or googlegroup:
https://groups.google.com/forum/#!topic/rpackageggir/RY8wzp7_Dos/discussion.
Thanks

from ggir.