Comments (2)
Hi Charles,
Although, we have not tested the scenario you explained but I would give the ONT/PacBio together to haslr. It may work without any other modifications.
from haslr.
Hey Fhach, thank you for your swift response. I have supplied both long reads to haslr and seem to be running smoothly so far. But ill have to wait for the final assembly to access the success
below is the one of code Im running in the the server :
#running the HASLR in command line
haslr.py --type pacbio --type nanopore --out bat_genome_output --genome 3g --long pacbio_subreads.fastq --long nanopore_reads.fastq --short illumina_lane1_forward.fastq illumina_lane1_reverse.fastq llumina_lane2_forward.fastq illumina_lane2_reverse.fastq
humbles regards
charles
from haslr.
Related Issues (20)
- speed running HOT 14
- assembling long reads using HASLR... failed ERROR HOT 9
- Debug Message in log File
- Bug while running script: "could not find file"
- Short Homo Sapien Assembly from Genome in a Bottle Data HOT 10
- Multiple long read files in the latest version
- Changing K-mer size of Minia leads to final fasta of zero bits
- Failing while checking minia
- question multiple libraries?
- Does this tool do phasing?
- kmer determination
- Much Shorter Assembly than Expected HOT 1
- AttributeError: 'module' object has no attribute 'run' HOT 1
- lr0x.fasta... [ERROR] option -d/--depth is required HOT 1
- new release for bioconda
- ERROR: "haslr_assemble" returned non-zero exit status
- Clean raw data prior to assembly
- Assembling the test data does not generate an assembly HOT 2
- final.fa is 0 kb HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from haslr.