volcanicsalmon Goto Github PK

2022-march-single-cell-rna-seq-analysis

A workshop for biologists preparing to run their first single cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!

ancient-divergence-indian-tibetan-wolves-paper

This repository contains the datasets and code I used in the manuscript "Ancient divergence of Indian and Tibetan wolves revealed by recombination-aware phylogenomics."

anopheles_gambiae_structure_lvb

Scripts to analyze population structure of Anopheles gambiae mosquitoes in Lake Victoria basin.

arg-selection

ARG-based inference of selection using deep learning

ariciaagestis_popgenms

Analysis of Aricia agestis (Brown Argus) butterfly population genetic data based on ddRADseq.

basis_functions_approach_to_gp

belowground_evolution

data and scripts for Vahsen et al. belowground trait evolution paper

benniella_phylogenetics

biof045-ngs_analysis

Next Generation Sequencing Data Analysis on the Cloud

bioinf-scripts

collection of bioinformatics related scripts for running on the Summit cluster with slurm

ciss

compintro

dimorphism-evolution

Pipeline analysis for the recent evolution of human body size sex differences

dpc

ec22_miron_etal

eeob563-spring2023

forecasting

fraser

FRASER - Find RAre Splicing Events in RNA-seq

geog_891_final_project

hawaiian_drosophilidae_phylogeny_2021

Upcoming manuscript on discordance in the phylogeny of Hawaiian Drosophila and Scaptomyza

howler_metabolites

These files will allow you to replicate the analyses we used to compare howler monkey diet, microbiome, and fecal metabolites across seasons.

lcwgs-simulation

leehom

Bayesian reconstruction of ancient DNA fragments

marine_iguana

This repository has the bioinformatic pipelines used to analyze the fecal microbiome and resistome of marine iguanas from The Galapagos Islands. Three analyses were done: 16S RNA sequencing (microbiome), SmartChip RT-QPCR (resistome and mobilome), and Shot-gun sequencing (metagenomics).

olbg

olea

paleantology

Files for NSF postdoc project

pestis_adna

Identifying selection using changes in allele frequency during the black plague

pic

rdna_cnv