voduchuy Goto Github PK

cleanlab

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

cudafsp

CUDA-based implementation of the Finite State Projection (FSP) algorithm.

documenter.jl

A documentation generator for Julia.

exponentialutilities.jl

Utility functions for exponential integrators for the SciML scientific machine learning ecosystem

fspcvode_mex

Matlab interface with Sundials's CVODES library using Mex to solve ODEs of the form dx/dt = A(t)*x.

kalb_vo_2021

This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

krylovfspssa

Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.

noisymeasfiminjulia

noisymeasurementfim

Study optimal single-cell microscopy experiment design in the presence of measurement errors.

numcme.jl

Direct solution of the Chemical Master Equation in Julia.

numpy

The fundamental package for scientific computing with Python.

ordinarydiffeq.jl

High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)

pacmensl

Library for parallel direct solution of the Chemical Master Equation (CME).

publicationkeys

Generate word cloud of most frequent words in your papers from pdf files

pypacmensl

Python wrapper for PACMENSL.

ssit

stmcmccme

This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."

translationcuda

Stochastic simulation of single-cell translation using CUDA-enabled GPUs.

vo_2019_adamhfsp

Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.

voduchuy

Readme file for Huy Vo's Github