Vaughn Shirey's Projects
Repository for ANSP Entomology digitization related materials, guides, and other useful information.
Contains data and visualizations relevant to various biodiversity data visualization presentations and posters including those presented at SPNHC 2017.
A test of different ordination techniques for a trait based dataset.
Used to create sankey flow diagrams for visualization, relies on googleVis and iGraph. See readme.
Paper associated data and scripts for simulation, statistics, and figure generation.
Statistics used for a fire meta-analysis.
For visualizating entomology type collection data in a global network projection.
Active development for a shiny application that integrates the GoogleVis package in R. Specifically used for generating Sankey Flow Diagrams for collection characterization.
Rework of a previous project that used Sankey diagrams. This project experiments with parallel set visualization to maintain identity from node to node.
scripts to estimate richness change based on historical data
Code used to obtain records given a taxonomic list of spider from GBIF and calculate extent of occurrence (EOO) for each species. EOO is a metric used in IUCN Red Listing.
A script for calculating proximity to road features from raster and species occurrence data.
Symbiota Virtual Flora/Fauna project is an open source software project with central goals of developing online search engines and tools that will aid in the exploration & management of biodiversity data (herbarium specimens, images, checklist, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114
Personal development repository for Symbiota
Needed to push data from the omoccurrences table in Symbiota to Specify. Includes handling functions to parse serialized collector names to individual collectors (agents). This code is not complete, but provides a springboard for shuttling data between systems.
Takes non-DwC conforming biodiversity data and manipulates it into a simple DwC conforming dataframe.
Personal website.