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anspent_co-op

Repository for ANSP Entomology digitization related materials, guides, and other useful information.

biodiv_viz

Contains data and visualizations relevant to various biodiversity data visualization presentations and posters including those presented at SPNHC 2017.

biol419_ordination

A test of different ordination techniques for a trait based dataset.

body_size_results_visualization

butterflysampling

collectionssankey_r

Used to create sankey flow diagrams for visualization, relies on googleVis and iGraph. See readme.

datadrivendiscoveryperspective

fin_spatialbias

Paper associated data and scripts for simulation, statistics, and figure generation.

firemeta

Statistics used for a fire meta-analysis.

globnet_shiny

For visualizating entomology type collection data in a global network projection.

gvisshiny_dev

Active development for a shiny application that integrates the GoogleVis package in R. Specifically used for generating Sankey Flow Diagrams for collection characterization.

highlatitudenorthamericanbutterflyoccupancy

parset_ent_types

Rework of a previous project that used Sankey diagrams. This project experiments with parallel set visualization to maintain identity from node to node.

richness.change

scripts to estimate richness change based on historical data

rl_spiders

Code used to obtain records given a taxonomic list of spider from GBIF and calculate extent of occurrence (EOO) for each species. EOO is a metric used in IUCN Red Listing.

roadsideproximity

A script for calculating proximity to road features from raster and species occurrence data.

spiders

symbiota

Symbiota Virtual Flora/Fauna project is an open source software project with central goals of developing online search engines and tools that will aid in the exploration & management of biodiversity data (herbarium specimens, images, checklist, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114

symbiota_dev

Personal development repository for Symbiota

symbiotatospecifysql

Needed to push data from the omoccurrences table in Symbiota to Specify. Includes handling functions to parse serialized collector names to individual collectors (agents). This code is not complete, but provides a springboard for shuttling data between systems.

todwc

Takes non-DwC conforming biodiversity data and manipulates it into a simple DwC conforming dataframe.

vmshirey

vmshirey.github.io

Personal website.