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active_viscous_shell

FEniCS Python code for the manuscript 'A viscous active shell theory of the cell cortex' by H. Borja da Rocha et al.

blastocoel_review

Jupyter notebooks used for the review "Blastocoel morphogenesis: a biophysics perspective" by M. Le-Verge-Serandour and H. Turlier

bundling_score

Small utility to extract the bundling score from actomyosin network images

delaunay-watershed

Python package to reconstruct a multimaterial nonmanifold surface mesh from 3D segmentation masks of tissues or nuclei

delaunay_watershed_2d

Python package to reconstruct a multimaterial nonmanifold polyline mesh from 2D segmentation masks of tissues or nuclei

deltamic

foambryo

Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues

foambryo2d

Python package to infer tensions from 2D microscopy images of embryos and tissues

hydroosmotic_chain

lumen_network

2D lumen network

membrane-cortex-tension

Supplementary code of the manuscript "Actin cortex drives membrane tension propagation in cells"