viparc

The package viparc is a collection of functions used in the ViParc project.

Installation

is not currently available from CRAN, but you can install the development version from github with:

> if (!"devtools" %in% rownames(installed.packages())) install.packages("devtools")
> devtools::install_github("choisy/viparc")

ViParc's Projects

amu_metrics

Nguyen V.C. et al. (2019) High resolution monitoring of antimicrobial consumption in Vietnamese small-scale chicken farms highlights discrepancies between study metrics. Frontiers in Vet. Sci.

animals_humans

Carrique-Mas J. et al. (2020) An estimation of total antimicrobial usage in humans and animals in Vietnam. Antimicrob. Resist. Infect. Control.

antimicrobial_misuse

Choisy M. et al. (2019) Assessing antimicrobial misuse in small-scale chicken farms in Vietnam from an observational study. BMC Vet. Res.

clires_data

Data from the CliRes database.

colistin_resistance

Bastard J. et al. (2020) Dynamics of colistine resistance in Mekong delta chicken farms.

essential_oils

Van's study on essential oils

feeds

Nguyen V.C. et al. (2020) Feeds study.

fluidigm

AMU and antimicrobial resistance genes in chicken farms

pathogens

Van N.T.B. et al. (2019) Characterization of viral, bacterial, and parasitic causes of disease in small-scale chicken flocks in the Mekong Delta of Vietnam. Poultry Science.

prophylactic

Nguyen V.C. et al. (2020) Ineffective and deleterious impact of prophylactic antimicrobial use (AMU) and a palliative effect of therapeutic AMU in small-scale chicken flocks.

serology_vaccination

Van N.T.B. et al. (2020) Vaccination status and serological investigation of some viral and bacterial diseases in small-scale chicken farms in the Mekong Delta region of Vietnam.