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2020-07-17-miskatonic

515f-y_926r_database_construction

A repository containing code for constructing qiime2 databases for the "Parada primers" (515F-Y / 926R). See linked OSF repo for the actual artifacts for specific qiime2 versions.

awesome-becl-resources

Awesome resources for biological engineering students compiled by the MIT Communication Lab

b-mis-normalization

Best-matched internal standard normalization for metabolomics

bioin

bioinformatics-100-days

Learn and practice the bioinformatics skills in 100 Days.

bioinformatics-data-skills

Supplementary files for my book, "Bioinformatics Data Skills"

bluecarbon

cdom

The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organic matter (CDOM).

chinese-std-gb-t-7714-related-csl

GB/T 7714相关的csl以及Zotero使用技巧及教程。

corems

CoreMS is a comprehensive mass spectrometry software framework

cytoscape

Cytoscape: an open source platform for network analysis and visualization

day3-emsl-summerschool-2022

KNOW YOUR ORGANIC MATTER

easv-pipeline-for-515y-926r

This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

edna_microbes_whales

eDNA params files

eemr

Utilities for pre-processing emission-excitation-matrix (EEM).

emp

Code repository of the Earth Microbiome Project.

enviroms

EnviroMS is a software for natural organic matter data processing and annotation

fouriertransform

Python package for performing FT-ICR MS analysis

ftmsranalysis

ftmsvisualization

A suite of tools for visualizing complex mixture FT-MS data

geminiprochat

Minimal web UI for GeminiPro.

gephi

Gephi - The Open Graph Viz Platform

ggoceanmaps

Plot oceanographic research data on maps using ggplot2

ggts

draws a TS diagram using ggplot2

git_learn

Git is a good start.

gkpbt-css-circle

css-circle

icrtutorial

This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Workshop 2019, the AGU CZO/Watershed Workshop, and the EMSL Summer School.

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).