victor-gil-sepulveda Goto Github PK

3dmol.js

WebGL accelerated JavaScript molecular graphics library

bmat_service

coursera-datasciencetrack

Files for the Data Science track Coursera courses

coursera-dukesqlforbigdata

Files for the assignments of the "Managing Big Data with MySQL" Coursera course by Duke University

datasharing

The Leek group guide to data sharing

getfinance_test

intranet-inventory

Very simple inventory service for intranet

intranet-inventory-front

jquery-wizard

An asynchronous form wizard that supports branching.

jsfeat

JavaScript Computer Vision library.

jsplumb

Visual connectivity for webapps

mastermind

meetupphotodownloader

Tool to download albums from the meetup website.

miniverse

mintprovision

The bash commands needed to provision my workstation. It comes really handy when my system must be reinstalled :)

pathplanning-rrt

(Incomplete) Files for a robotics Rapidly-exploring Randoom Tree implementation

pelican_blog

This website's files. Proudly generated with Pelican!

phd-anminternalcoordinates

Implementation of an Anisotropic Normal Mode methodology in Internal Coordinates.

phd-anmpythonhelpers

Some tools for the ANM in internal coordinates project

phd-autocorrelation

Scripts to calculate atomic autocorrelation from PDB trajectories

phd-condensedmatrix

Implementation of a fast distance matrix container (triangular symmetric matrix with 0 diag.). Formerly part of pyRMSD.

phd-gpcr

Some scripts for the GPCR experiment.

phd-hivproteasemutation

Python module to perform the (computational) experiments of [this paper] through PELE webserver queries.

phd-hpcmodel

Helper scripts for the (cancelled) contextual HPC project.

phd-idp

Scripts to work in the intrinsically disordered proteins project.

phd-pdbtrajectorymerger

A very simple Python program to merge trajectories of biomolecules in PDB format. Trajectories can have an arbitrary number of frames, which means that it can be used to merge single PDBs too. The only restriction is that all each frame (conformation or system) must be encompassed by MODEL / ENMDL tags. If the last frame is broken, the merger will automatically skip it.

phd-plopmetrics

Toolkit to extract old PELE (Fortran) metrics.

phd-vmdsnapshottiles

A Python script to generate a tiled image of the frames of a pdb trajectory.

pyproct

pyProCT is an open source cluster analysis software especially adapted for jobs related with structural proteomics. Its approach allows users to define a clustering goal (clustering hypothesis) based on their domain knowledge. This hypothesis will guide the software in order to find the best algorithm and parameters (including the number of clusters) to obtain the result that fulfills their expectatives. In this way users do not need to use cluster analysis algorithms as a black box, improving this way the results. pyProCT not only generates a resulting clustering, it also implements some use cases like the extraction of representatives or trajectory redundance elimination.

pyproct-gui

Javascript-based interface for pyProCT