Comments (1)
The current default vg giraffe
is really tailored specifically to short reads. It will run on long reads, but it will not be efficient. We are actively working on new algorithms for accurate long reads like HiFi, but the new features are still experimental. We aren't yet maintaining a consistent interface, and the performance may fluctuate unpredictably as we continue development.
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Related Issues (20)
- Using vg to analyze transcriptomic data from a mixed background HOT 4
- `vg giraffe` for long reads HOT 1
- Missing '--alt-prefix' option in recent versions of vg deconstruct.
- Problem with vg autoindex with phased VCF HOT 2
- No sample & read group field in BAM output with vg map HOT 5
- I cant get .vg file using vg construct HOT 2
- `vg autoindex` fails on GFA file containing 20k SARS-CoV-2 sequences. HOT 1
- error vg autoindex: Input is not sufficient to create indexes HOT 2
- Oddly high mapping quality when aligning reads with Ns HOT 6
- Release vg v1.56.0
- I have a question about gam file. HOT 2
- vg surject: incorrect behavior near polymorphic {repetitive} insertions HOT 4
- Can vg construct a trans-chromosomal graph ? HOT 5
- ERROR: Signal 6 occurred. VG has crashed. HOT 8
- vg construct will let you create a graph without reference paths, with different path names than Cactus
- VG convert to gfa and back will drop path data. HOT 7
- ERROR: Signal 6 occurred. VG has crashed. Terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc HOT 1
- VG has crashed
- vg giraffe - Signal 6 occurred. VG has crashed HOT 1
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