Defining personal genomes on a variation graph about vg HOT 5 CLOSED

@inti I think this should be possible by annotating paths in the graph. These paths can be used to project alignments (vg surject) against the graph against a particular path. This subgraph could be a personal genome. Does this make sense?

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Yes, it does make sense. I just have not got chance to try it. I will have a chance soonish. Cheers, Inti

On Jul 13, 2015, at 08:38, Erik Garrison [email protected] wrote:

@inti https://github.com/inti I think this should be possible by annotating paths in the graph. These paths can be used to project alignments (vg surject) against the graph against a particular path. This subgraph could be a personal genome. Does this make sense?

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I'm going to close this because, while it's a cool project, it's not really a vg bug.

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Hey @inti , if you've tried it out let us know - we'd like to hear a success story if you have one, and you can catch us on gitter if for some reason things didn't work!

from vg.

Thanks. I will try to get around to test it and I will let you know. Cheers, Inti

On Sep 21, 2016, at 05:03, Eric T. Dawson [email protected] wrote:

Hey @inti https://github.com/inti , if you've tried it out let us know - we'd like to hear a success story if you have one, and you can catch us on gitter https://gitter.im/vgteam/vg if for some reason things didn't work!

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