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bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio.rnaseq

Quality control, differential gene/transcript expression and pathway analysis for bcbio RNA-seq runs

bcbiolite

bcbioLite

chbutils

Utility functions in R

customplots

degreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

docker_configuration

edx-data_analysis_for_life_sciences

gamestonkterminal

The next best thing after Bloomberg Terminal

helper_code

incubator

Where all ideas and discussions happen to lead to new repositories

isatab-helper

Repository for isatab related functions

mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

myconfig

Repository to store personal configuration for tools

nf-co.re

Code and files for the main nf-core website.

popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

stockscreener

A handy tool for screening stocks based on certain criteria from several markets around the world. The list can then be delivered to your email address (one-off or regularly via crontab).

thesis

Developed code for thesis projects

tools

Python package with helper tools for the nf-core community.

tximport

Import and summarize transcript-level estimates for gene-level analysis