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Roman Feldbauer's Projects

binsanity icon binsanity

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

bioconcotk icon bioconcotk

Bioconductor components for general cancer genomics

deepfam icon deepfam

Deep learning based alignment-free method for protein family modeling and prediction

deepnog icon deepnog

Protein orthologous group assignment with deep learning

eggnog-mapper icon eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

liftoff icon liftoff

An accurate GFF3/GTF lift over pipeline

phenotrex icon phenotrex

Microbial Phenotype Prediction, re-implemented with Python 3.7 and scikit-learn

puffinn icon puffinn

Parameterless and Universal FInding of Nearest Neighbors

pyfaidx icon pyfaidx

Efficient pythonic random access to fasta subsequences

salsa icon salsa

SALSA: A tool to scaffold long read assemblies with Hi-C data

scikit-hubness icon scikit-hubness

A Python package for hubness analysis and high-dimensional data mining

scipy icon scipy

Scipy library main repository

selene icon selene

a framework for training sequence-level deep learning networks

thundersvm icon thundersvm

ThunderSVM: A Fast SVM Library on GPUs and CPUs

udsmprot icon udsmprot

Protein sequence classification with self-supervised pretraining

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