Comments (3)
There are two example graph objects loaded when you load the package: example_graph
, which is in table format, and example_igraph
, which is in igraph
format. Some functions only work with graphs in igraph
format.
Try newgraphs = graph_plusone(example_igraph)
!
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Ah, ok! Yes, the example_igraph
works. It should probably be updated in the admixture page though. Thanks so much!
from admixtools.
You're right, thanks for pointing it out. I fixed that now!
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Related Issues (20)
- Do qpWave, qpAdm, and f5 have requirements on the minimum number of individuals for each population? HOT 1
- est_to_boo does not preserve the SNP block names (number of SNPs), but est_to_loo() does. Is that intended? HOT 2
- large difference of f3 result between admixtools and admixtools2 HOT 1
- Zero drift edges HOT 2
- Behavior affected by other R packages? HOT 2
- Error in if (gimp > 0 && gimp%%plusminus_generations == 0) { : missing value where TRUE/FALSE needed HOT 2
- please add tags/releases HOT 2
- Inconsistent bootstrap significance testing HOT 5
- keyword argument typo lack of error HOT 3
- Comparing graphs with compare_fits HOT 2
- auto_only: change default value to FALSE HOT 1
- qpWave returning one fewer ranks than expected HOT 1
- qpAdm computation stucks when the num. of letf pops below 3
- Issue with f3 and f4 HOT 2
- running many replicates of find_graphs? HOT 1
- Issue with extract_f2 HOT 2
- Problem making f2 file from plink .bed .fam and .bim files HOT 6
- Suggestion: Change to p_emp calculation in compare_fits() HOT 1
- possible to get worst residuals from `find_graphs` models? HOT 1
- Installation / Update error HOT 4
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